Information about Natural Selection
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Natural selection is the process by which favorable traits that are heritable become more common in successive generations of a population of reproducing organisms, and unfavorable traits that are heritable become less common. Natural selection acts on the phenotype, or the observable characteristics of an organism, such that individuals with favorable phenotypes are more likely to survive and reproduce than those with less favorable phenotypes. If these phenotypes have a genetic basis, then the genotype associated with the favorable phenotype will increase in frequency in the next generation. Over time, this process can result in adaptations that specialize organisms for particular ecological niches and may eventually result in the emergence of new species.
Natural selection is one of the cornerstones of modern biology. The term was introduced by Charles Darwin in his groundbreaking 1859 book The Origin of Species[1] in which natural selection was described by analogy to artificial selection, a process by which animals with traits considered desirable by human breeders are systematically favored for reproduction. The concept of natural selection was originally developed in the absence of a valid theory of inheritance; at the time of Darwin's writing, nothing was known of modern genetics. Although Gregor Mendel, the father of modern genetics, was a contemporary of Darwin's, his work would lie in obscurity until the early 20th century. The union of traditional Darwinian evolution with subsequent discoveries in classical and molecular genetics is termed the modern evolutionary synthesis. Although other mechanisms of molecular evolution, such as the neutral theory advanced by Motoo Kimura, have been identified as important causes of genetic diversity, natural selection remains the single primary explanation for adaptive evolution.
General principles

Darwin's illustrations of beak variation in the finches of the Galápagos Islands, which hold 13 closely related species that differ most markedly in the shape of their beaks. The beak of each species is suited to its preferred food, suggesting that beak shapes evolved by natural selection. See also character displacement, adaptive radiation, divergent evolution.
- See also: Genotype-phenotype distinction.
When different organisms in a population possess different versions of a gene for a certain trait, each of these versions is known as an allele. It is this genetic variation that underlies phenotypic traits. A typical example is that certain combinations of genes for eye color in humans which, for instance, give rise to the phenotype of blue eyes. (On the other hand, when all the organisms in a population share the same allele for a particular trait, and this state is stable over time, the allele is said to be fixed in that population.)
Some traits are governed by only a single gene, but most traits are influenced by the interactions of many genes. A variation in one of the many genes that contributes to a trait may have only a small effect on the phenotype; together, these genes can produce a continuum of possible phenotypic values.[2]
Nomenclature and usage
The term "natural selection" has slightly different definitions in different contexts. In simple terms, "natural selection" is most often defined to operate on heritable traits, but can sometimes refer to the differential reproductive success of phenotypes regardless of whether those phenotypes are heritable. Natural selection is "blind" in the sense that individuals' level of reproductive success is a function of the phenotype and not of whether or to what extent that phenotype is heritable. Following Darwin's primary usage<ref name="origin" /> the term is often used to refer to both the consequence of blind selection and to its mechanisms.[3][4] It is sometimes helpful to explicitly distinguish between selection's mechanisms and its effects; when this distinction is important, scientists define "natural selection" specifically as "those mechanisms that contribute to the selection of individuals that reproduce," without regard to whether the basis of the selection is heritable. This is sometimes referred to as 'phenotypic natural selection.'[5]Traits that cause greater reproductive success of an organism are said to be selected for whereas those that reduce success are selected against. Selection for a trait may also result in the selection of other correlated traits that do not themselves directly influence fitness. This may occur as a result of pleiotropy or gene linkage.[6]
Fitness
Though natural selection acts on individuals, its average effect on all individuals with a particular genotype corresponds to the fitness of that genotype. Very low-fitness genotypes cause their bearers to have few or no offspring on average; examples include many human genetic disorders like cystic fibrosis. Conditions like sickle-cell anemia may have low fitness in the general human population, but because it confers immunity from malaria, it has high fitness value in populations which have high malaria infection rates. Broadly speaking, an organism's fitness is a function of its alleles' fitnesses. Since fitness is an averaged quantity, however, it is possible a favorable mutation may arise in an individual that does not survive to adulthood for unrelated reasons.
Types of selection
Natural selection can act on any phenotypic trait, and selective pressure can be produced by any aspect of the environment, including mates and conspecifics, or members of the same species. However, this does not imply that natural selection is always directional and results in adaptive evolution; natural selection often results in the maintenance of the status quo by eliminating less fit variants.The unit of selection can be the individual or it can be another level within the hierarchy of biological organisation, such as genes, cells, and kin groups. There is still debate about whether natural selection acts at the level of groups or species to produce adaptations that benefit a larger, non-kin group. Selection at a different level such as the gene can result in an increase in fitness for that gene, while at the same time reducing the fitness of the individuals carrying that gene, in a process called intragenomic conflict. Overall, the combined effect of all selection pressures at various levels determines the overall fitness of an individual, and hence the outcome of natural selection.
The life cycle of a sexually reproducing organism. Various components of natural selection are indicated for each life stage.[7]
Sexual selection
An example: antibiotic resistance
Schematic representation of how antibiotic resistance is enhanced by natural selection. The top section represents a population of bacteria before exposure to an antibiotic. The middle section shows the population directly after exposure, the phase in which selection took place. The last section shows the distribution of resistance in a new generation of bacteria. The legend indicates the resistance levels of individuals.
A well-known example of natural selection in action is the development of antibiotic resistance in microorganisms. Antibiotics have been used to fight bacterial diseases since the discovery of penicillin in 1928 by Alexander Fleming. Natural populations of bacteria contain, among their vast numbers of individual members, considerable variation in their genetic material, primarily as the result of mutations. When exposed to antibiotics, most bacteria die quickly, but some may have mutations that make them slightly less susceptible. If the exposure to antibiotics is short, these individuals will survive the treatment. This selective elimination of maladapted individuals from a population is natural selection.
These surviving bacteria will then reproduce again, producing the next generation. Due to the elimination of the maladapted individuals in the past generation, this population contains more bacteria that have some resistance against the antibiotic. At the same time, new mutations occur, contributing new genetic variation to the existing genetic variation. Spontaneous mutations are very rare, and advantageous mutations are even rarer. However, populations of bacteria are large enough that a few individuals will have beneficial mutations. If a new mutation reduces their susceptibility to an antibiotic, these individuals are more likely to survive when next confronted with that antibiotic. Given enough time, and repeated exposure to the antibiotic, a population of antibiotic-resistant bacteria will emerge.
The widespread use and misuse of antibiotics has resulted in increased microbial resistance to antibiotics in clinical use, to the point that the methicillin-resistant Staphylococcus aureus (MRSA) has been described as a 'superbug' because of the threat it poses to health and its relative invulnerability to existing drugs.[12] Response strategies typically include the use of different, stronger antibiotics; however, new strains of MRSA have recently emerged that are resistant even to these drugs.[13] This is an example of what is known as an evolutionary arms race, in which bacteria continue to develop strains that are less susceptible to antibiotics, while medical researchers continue to develop new antibiotics that can kill them. A similar situation occurs with pesticide resistance in plants and insects. Arms races are not necessarily induced by man; a well-documented example involves the elaboration of the RNA interference pathway in plants as means of innate immunity against viruses.[14]
Genetical theory of natural selection
Natural selection by itself is a simple concept, in which fitness differences between phenotypes play a crucial role. It is the union of natural selection as a mechanism with genetic material as a substrate that offers most of the theory's explanatory powerDirectionality of selection
When some component of a trait is heritable, selection will alter the frequencies of the different alleles, or variants of the gene that produces the variants of the trait. Selection can be divided into three classes, on the basis of its effect on allele frequencies.[15]Directional selection occurs when a certain allele has a greater fitness than others, resulting in an increase in frequency of that allele. This process can continue until the allele is fixed and the entire population shares the fitter phenotype. It is directional selection that is illustrated in the antibiotic resistance example .
Far more common is stabilizing selection (also known as purifying selection), which lowers the frequency of alleles that have a deleterious effect on the phenotype - that is, produce organisms of lower fitness. This process can continue until the allele is eliminated from the population. Purifying selection results in functional genetic features, such as protein-coding genes or regulatory sequences, being conserved over time due to selective pressue against deleterious variants.
Finally, a number of forms of balancing selection exist, which do not result in fixation, but maintain an allele at intermediate frequencies in a population. This can occur in diploid species (that is, those that have two pairs of chromosomes) when heterozygote individuals, who have different alleles on each chromosome at a single genetic locus, have a higher fitness than homozygote individuals that have two of the same alleles. This is called heterozygote advantage or overdominance, of which the best-known example is the malarial resistance observed in heterozygous humans who carry only one copy of the gene for sickle cell anemia. Maintenance of allelic variation can also occur through disruptive or diversifying selection, which favors genotypes that depart from the average in either direction (that is, the opposite of overdominance), and can result in a bimodal distribution of trait values. Finally, balancing selection can occur through frequency-dependent selection, where the fitness of one particular phenotype depends on the distribution of other phenotypes in the population. The principles of game theory have been applied to understand the fitness distributions in these situations, particularly in the study of kin selection and the evolution of reciprocal altruism.[16][17]
Selection and genetic variation
A portion of all genetic variation is functionally neutral in that it produces no phenotypic effect or significant difference in fitness; the hypothesis that this variation accounts for a large fraction of observed genetic diversity is known as the neutral theory of molecular evolution and was originated by Motoo Kimura. Neutral variation was once thought to encompass most of the genetic variation in non-coding DNA, which was hypothesized to be composed of "junk DNA". However, more recently, the functional roles of non-coding DNA, such as the regulatory and developmental functions of RNA gene products, has been studied in depth;[18] large parts of non-protein-coding DNA sequences are highly conserved under strong purifying selection and thus do not vary much from individual to individual, indicating that mutations in these regions have deleterious consequences.[19][20] When genetic variation does not result in differences in fitness, selection cannot directly affect the frequency of such variation. As a result, the genetic variation at those sites will be higher than at sites where variation does influence fitness.<ref name="Rice" />Mutation selection balance
Natural selection results in the reduction of genetic variation through the elimination of maladapted individuals and consequently of the mutations that caused the maladaptation. At the same time, new mutations occur, resulting in a mutation-selection balance. The exact outcome of the two processes depends both on the rate at which new mutations occur and on the strength of the natural selection, which is a function of how unfavorable the mutation proves to be. Consequently, changes in the mutation rate or the selection pressure will result in a different mutation-selection balance.Genetic linkage
Genetic linkage occurs when the loci of two alleles are linked, or in close proximity to each other on the chromosome. During the formation of gametes, recombination of the genetic material results in reshuffling of the alleles. However, the chance that such a reshuffle occurs between two alleles depends on the distance between those alleles; the closer the alleles are to each other, the less likely it is that such a reshuffle will occur. Consequently, when selection targets one allele, this automatically results in selection of the other allele as well; through this mechanism, selection can have a strong influence on patterns of variation in the genome.Selective sweeps occur when an allele becomes more common in a population as a result of positive selection. As the prevalence of one allele increases, linked alleles can also become more common, whether they are neutral or even slightly deleterious. This is called genetic hitchhiking. A strong selective sweep results in a region of the genome where the positively selected haplotype (the allele and its neighbours) are essentially the only ones that exist in the population.
Whether a selective sweep has occurred or not can be investigated by measuring linkage disequilibrium, or whether a given haplotype is overrepresented in the population. Normally, genetic recombination results in a reshuffling of the different alleles within a haplotype, and none of the haplotypes will dominate the population. However, during a selective sweep, selection for a specific allele will also result in selection of neighbouring alleles. Therefore, the presence of strong linkage disequilibrium might indicate that there has been a 'recent' selective sweep, and this can be used to identify sites recently under selection.
Background selection is the opposite of a selective sweep. If a specific site experiences strong and persistent purifying selection, linked variation will tend to be weeded out along with it, producing a region in the genome of low overall variability. Because background selection is a result of deleterious new mutations, which can occur randomly in any haplotype, it produces no linkage disequilibrium.
Evolution by means of natural selection
The exuberant tail of the peacock is thought to be the result of sexual selection by females. This peacock is an albino - it carries a mutation that makes it unable to produce melanin. Selection against albinos in nature is intense because they are easily spotted by predators or are unsuccessful in competition for mates, and so these mutations are usually rapidly eliminated by natural selection
By the definition of fitness, individuals with greater fitness are more likely to contribute offspring to the next generation, while individuals with lesser fitness are more likely to die early or fail to reproduce. As a result, alleles which on average result in greater fitness become more abundant in the next generation, while alleles which generally reduce fitness become rarer. If the selection forces remain the same for many generations, beneficial alleles become more and more abundant, until they dominate the population, while alleles with a lesser fitness disappear. In every generation, new mutations and recombinations arise spontaneously, producing a new spectrum of phenotypes. Therefore, each new generation will be enriched by the increasing abundance of alleles that contribute to those traits that were favored by selection, enhancing these traits over successive generations.
X-ray of the left hand of a ten year old boy with polydactyly.
Some mutations occur in so-called regulatory genes. Changes in these can have large effects on the phenotype of the individual because they regulate the function of many other genes. Most, but not all, mutations in regulatory genes result in non-viable zygotes. Examples of nonlethal regulatory mutations occur in HOX genes in humans, which can result in a cervical rib[22] or polydactyly, an increase in the number of fingers or toes.[23] When such mutations result in a higher fitness, natural selection will favor these phenotypes and the novel trait will spread in the population.
Established traits are not immutable; traits that have high fitness in one environmental context may be much less fit if environmental conditions change. In the absence of natural selection to preserve such a trait, it will become more variable and deteriorate over time, possibly resulting in a vestigial manifestation of the trait. In many circumstances, the apparently vestigial structure may retain a limited functionality, or may be co-opted for other advantageous traits in a phenomenon known as preadaptation. A famous example of a vestigial structure, the eye of the blind mole rat, is believed to retain function in photoperiod perception.[24]
Speciation
Speciation requires selective mating, which result in a reduced gene flow. Selective mating can be the result of, for example, a change in the physical environment (physical isolation by an extrinsic barrier), or by sexual selection resulting in assortative mating. Over time, these subgroups might diverge radically to become different species, either because of differences in selection pressures on the different subgroups, or because different mutations arise spontaneously in the different populations, or because of founder effects - some potentially beneficial alleles may, by chance, be present in only one or other of two subgroups when they first become separated. A lesser-known mechanism of speciation occurs via hybridization, well-documented in plants and occasionally observed in species-rich groups of animals such as cichlid fishes.[25] Such mechanisms of rapid speciation can reflect a mechanism of evolutionary change known as punctuated equilibrium, which suggests that evolutionary change and particularly speciation typically happens quickly after interrupting long periods of stasis.Genetic changes within groups result in increasing incompatibility between the genomes of the two subgroups, thus reducing gene flow between the groups. Gene flow will effectively cease when the distinctive mutations characterizing each subgroup become fixed. As few as two mutations can result in speciation: if each mutation has a neutral or positive effect on fitness when they occur separately, but a negative effect when they occur together, then fixation of these genes in the respective subgroups will lead to two reproductively isolated populations. According to the biological species concept, these will be two different species.
Historical development
The modern theory of natural selection derives from the work of Charles Darwin in the nineteenth century.
Pre-Darwinian theories
Several ancient philosophers expressed the idea that Nature produces a huge variety of creatures, apparently randomly, and that only those creatures survive that manage to provide for themselves and reproduce successfully; well-known examples include Empedocles[26] and his intellectual successor, Lucretius,[27] while related ideas were later refined by Aristotle.[28] The struggle for existence was later first desribed by al-Jahiz in the 9th century.[29][30] Such classical arguments were reintroduced in the 18th century by Pierre Louis Maupertuis[31] and others, including Charles Darwin's grandfather Erasmus Darwin. While these forerunners had an influence on Darwinism, they later had little influence on the trajectory of evolutionary thought after Charles Darwin.Until the early 19th century, the prevailing view in Western societies was that differences between individuals of a species were uninteresting departures from their Platonic ideal (or typus) of created kinds. However, the theory of uniformitarianism in geology promoted the idea that simple, weak forces could act continuously over long periods of time to produce radical changes in the Earth's landscape; the success of this theory raised awareness of the vast scale of geological time and made plausible the idea that tiny, virtually imperceptible changes in successive generations could produce consequences on the scale of differences between species. Early 19th century evolutionists such as Jean Baptiste Lamarck suggested the inheritance of acquired characteristics as a mechanism for evolutionary change; adaptive traits acquired by an organism during its lifetime could be inherited by that organism's progeny, eventually causing transmutation of species.[32] This theory has come to be known as Lamarckism and was an influence on the anti-genetic ideas of the Stalinist Soviet biologist Trofim Lysenko.[33]
Darwin's hypothesis
Between 1842 and 1844, Charles Darwin outlined his theory of evolution by natural selection as an explanation for adaptation and speciation. He defined natural selection as the "principle by which each slight variation [of a trait], if useful, is preserved".[34] The concept was simple but powerful: individuals best adapted to their environments are more likely to survive and reproduce.[35] As long as there is some variation between them, there will be an inevitable selection of individuals with the most advantageous variations. If the variations are inherited, then differential reproductive success will lead to a progressive evolution of particular populations of a species, and populations that evolve to be sufficiently different might eventually become different species.Darwin's ideas were inspired by the observations that he had made on the Voyage of the Beagle, and by the work of two economists. The first was Thomas Malthus, who in An Essay on the Principle of Population, noted that population (if unchecked) increases exponentially whereas the food supply grows only arithmetically; thus inevitable limitations of resources would have demographic implications, leading to a "struggle for existence", in which only the fittest would survive. The second was Adam Smith who, in The Wealth of Nations, identified a regulating mechanism in free markets, which he referred to as the "invisible hand", which suggests that prices self-adjust according to supplies and demand [36]. Thus for Darwin, the disaster that was supposed to occur according to Malthus was kept in check and constantly improved by competition (or law of selection).
Once the theory had been formulated, Darwin was meticulous about gathering and refining evidence, sharing his ideas only with a few friends; he was inspired to publish after the young naturalist Alfred Russel Wallace independently conceived of the principle and described it in a letter to Darwin. The two men arranged to present two short papers to the Linnean Society announcing co-discovery of the principle in 1858;[37] Darwin published a more detailed account of his evidence and conclusions in The Origin of Species in 1859. In the 6th edition of The Origin of Species Darwin acknowledged that others — notably William Charles Wells in 1813, and Patrick Matthew in 1831 — had proposed similar theories, but had not presented them fully or in notable scientific publications.
Darwin thought of natural selection by analogy to how farmers select crops or livestock for breeding, which he called artificial selection; in his early manuscripts he referred to a 'Nature' which would do the selection. At the time, other mechanisms of evolution such as evolution by genetic drift were not yet explicitly formulated, and Darwin realized that selection was likely only part of the story: "I am convinced that [it] has been the main, but not exclusive means of modification."[38] For Darwin and his contemporaries, natural selection was thus essentially synonymous with evolution by natural selection. After the publication of The Origin of Species, educated people generally accepted that evolution had occurred in some form. However, natural selection remained controversial as a mechanism, partly because it was perceived to be too weak to explain the range of observed characteristics of living organisms, and partly because even supporters of evolution balked at its 'unguided' and non-progressive nature,[39] a response that has been characterized as the single most significant impediment to the idea's acceptance.[40] However, some thinkers enthusiastically embraced Darwinism; after reading Darwin, Herbert Spencer introduced the term survival of the fittest, which became a popular summary of the theory. Although the phrase is still often used by non-biologists, modern biologists avoid it because it is tautological if fittest is read to mean functionally superior and is applied to individuals rather than considered as an averaged quantity over populations.[41] In a letter to Charles Lyell in September 1860, Darwin regrets the use of the term 'Natural Selection', preferring the term 'Natural Preservation'.[42]
Modern evolutionary synthesis
Impact of the idea
Darwin's ideas, along with those of Adam Smith and Karl Marx, had a profound influence on 19th century thought. Perhaps the most radical claim of the theory of evolution through natural selection is that "elaborately constructed forms, so different from each other, and dependent on each other in so complex a manner" evolved from the simplest forms of life by a few simple principles. This claim inspired some of Darwin's most ardent supporters—and provoked the most profound opposition. The radicalism of natural selection, according to Stephen Jay Gould,[47] lay in its power to "dethrone some of the deepest and most traditional comforts of Western thought". In particular, it challenged long-standing beliefs in such concepts as a special and exalted place for humans in the natural world and a benevolent creator whose intentions were reflected in nature's order and design.Social and psychological theory
The social implications of the theory of evolution by natural selection also became the source of continuing controversy. Friedrich Engels, a German political philosopher and co-originator of the ideology of communism, wrote in 1872 that "Darwin did not know what a bitter satire he wrote on mankind when he showed that free competition, the struggle for existence, which the economists celebrate as the highest historical achievement, is the normal state of the animal kingdom".[48] Interpretation of natural selection as necessarily 'progressive', leading to increasing 'advances' in intelligence and civilisation, was used as a justification for colonialism and policies of eugenics, as well as broader sociopolitical positions now described as Social Darwinism. Konrad Lorenz won the Nobel Prize in Physiology or Medicine in 1973 for his analysis of animal behavior in terms of the role of natural selection (particularly group selection). However, in Germany in 1940, in writings that he subsequently disowned, he used the theory as a justification for policies of the Nazi state. He wrote "... selection for toughness, heroism, and social utility...must be accomplished by some human institution, if mankind, in default of selective factors, is not to be ruined by domestication-induced degeneracy. The racial idea as the basis of our state has already accomplished much in this respect."[49] Others have developed ideas that human societies and culture evolve by mechanisms that are analogous to those that apply to evolution of species.[50]More recently, work among anthropologists and psychologists has led to the development of sociobiology and later evolutionary psychology, a field that attempts to explain features of human psychology in terms of adaptation to the ancestral environment. The most prominent such example, notably advanced in the early work of Noam Chomsky and later by Steven Pinker, is the hypothesis that the human brain is adapted to acquire the grammatical rules of natural language.[51] Other aspects of human behavior and social structures, from specific cultural norms such as incest avoidance to broader patterns such as gender roles, have been hypothesized to have similar origins as adaptations to the early environment in which modern humans evolved. By analogy to the action of natural selection on genes, the concept of memes - "units of cultural transmission", or culture's equivalents of genes undergoing selection and recombination - has arisen, first described in this form by Richard Dawkins[52] and subsequently expanded upon by philosophers such as Daniel Dennett as explanations for complex cultural activities, including human consciousness.[53] Extensions of the theory of natural selection to such a wide range of cultural phenomena have been distinctly controversial and are not widely accepted.[54]
Information and systems theory
In 1922, Alfred Lotka proposed that natural selection might be understood as a physical principle which could be energetically quantified,[55] a concept that was later developed by Howard Odum as the maximum power principle whereby evolutionary systems with selective advantage maximise the rate of useful energy transformation. Such concepts are sometimes relevant in the study of applied thermodynamics.The principles of natural selection have inspired a variety of computational techniques, such as "soft" artificial life, that simulate selective processes and can be highly efficient in 'adapting' entities to an environment defined by a specified fitness function.[56] For example, a class of heuristic optimization algorithms known as genetic algorithms, pioneered by John Holland in the 1970s and expanded upon by David Goldberg,[57] identify optimal solutions by simulated reproduction and mutation of a population of solutions defined by an initial probability distribution.[58] Such algorithms are particularly useful when applied to problems whose solution landscape is very rough or has many local minima. Other mechanisms of spontaneously generated complexity in computational simulations have been explored in cellular automata by Stephen Wolfram.[59]
See also
- Artificial selection
- Co-evolution
- Gene-centered view of evolution
- Genetic algorithm
- Negative selection
- Peppered moth evolution
- Ring species
- Unit of selection
References
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44. ^ Wright S (1932) The roles of mutation, inbreeding, crossbreeding and selection in evolution Proc 6th Int Cong Genet 1:356–66
45. ^ Dobzhansky Th (1937) Genetics and the Origin of Species Columbia University Press, New York. (2nd ed., 1941; 3rd edn., 1951)
46. ^ Mayr E (1942) Systematics and the Origin of Species Columbia University Press, New York. ISBN 0-674-86250-3
47. ^ The New York Review of Books: Darwinian Fundamentalism (accessed May 6, 2006)
48. ^ Engels F (1873-86) Dialectics of Nature 3d ed. Moscow: Progress, 1964 [5]
49. ^ Quoted in translation in Eisenberg L (2005) Which image for Lorenz? Am J Psychiatry 162:1760 [6]
50. ^ e.g. Wilson, DS (2002) Darwin's Cathedral: Evolution, Religion, and the Nature of Society. University of Chicago Press, ISBN 0-226-90134-3
51. ^ Pinker S. [1994] (1995). The Language Instinct: How the Mind Creates Language. HarperCollins: New York, NY, USA. ISBN 0-06-097651-9
52. ^ Dawkins R. [1976] (1989). The Selfish Gene. Oxford University Press: New York, NY, USA, p.192. ISBN 0-19-286092-5
53. ^ Dennett DC. (1991). Consciousness Explained. Little, Brown, and Co: New York, NY, USA. ISBN 0-316-18066-1
54. ^ For example, see Rose H, Rose SPR, Jencks C. (2000). Alas, Poor Darwin: Arguments Against Evolutionary Psychology. Harmony Books. ISBN 0609605135
55. ^ Lotka AJ (1922a) Contribution to the energetics of evolution [PDF] Proc Natl Acad Sci USA 8:147–51
Lotka AJ (1922b) Natural selection as a physical principle [PDF] Proc Natl Acad Sci USA 8:151–4
56. ^ Kauffman SA (1993) The Origin of order. Self-organization and selection in evolution. New York: Oxford University Press ISBN 0-19-507951-5
57. ^ Goldberg DE. (1989). Genetic Algorithms in Search, Optimization and Machine Learning. Addison-Wesley: Boston, MA, USA
58. ^ Mitchell, Melanie, (1996), An Introduction to Genetic Algorithms, MIT Press, Cambridge, MA.
59. ^ Wolfram, Stephen, A New Kind of Science p383 - 432
2. ^ Falconer DS & Mackay TFC (1996) Introduction to Quantitative Genetics Addison Wesley Longman, Harlow, Essex, UK ISBN 0-582-24302-5
3. ^ Fisher RA (1930) The Genetical Theory of Natural Selection Clarendon Press, Oxford
4. ^ Works employing or describing this usage:
Endler JA (1986). Natural Selection in the Wild. Princeton, New Jersey: Princeton University Press. ISBN 0-691-00057-3.
Williams GC (1966). Adaptation and Natural Selection. Oxford University Press.
5. ^ Works employing or describing this usage:
Lande R & Arnold SJ (1983) The measurement of selection on correlated characters. Evolution 37:1210-26
Futuyma DJ (2005) Evolution. Sinauer Associates, Inc., Sunderland, Massachusetts. ISBN 0-87893-187-2
Haldane, J.B.S. 1953. The measurement of natural selection. Proceedings of the 9th International Congress of Genetics. 1: 480-487
6. ^ Sober E (1984; 1993) The Nature of Selection: Evolutionary Theory in Philosophical Focus University of Chicago Press ISBN 0-226-76748-5
7. ^ Modified from Christiansen FB (1984) The definition and measurement of fitness. In: Evolutionary ecology (ed. Shorrocks B) pp65-79. Blackwell Scientific, Oxford by adding survival selection in the reproductive phase
8. ^ Pitnick S & Markow TA (1994) Large-male advantage associated with the costs of sperm production in Drosophila hydei, a species with giant sperm. Proc Natl Acad Sci USA 91:9277-81; Pitnick S (1996) Investment in testes and the cost of making long sperm in Drosophila. Am Nat 148:57-80
9. ^ Andersson, M (1995). Sexual Selection. Princeton, New Jersey: Princeton University Press. ISBN 0-691-00057-3.
10. ^ Eens M, Pinxten R. (2000). Sex-role reversal in vertebrates: behavioural and endocrinological accounts. Behav Processes 51(1-3):135-147. PMID 11074317
11. ^ Barlow GW. (2005). How Do We Decide that a Species is Sex-Role Reversed? The Quarterly Review of Biology 80(1):28–35. PMID 15884733
12. ^ MRSA Superbug News. Retrieved on 2006-05-06.
13. ^ Schito GC (2006). "The importance of the development of antibiotic resistance in Staphylococcus aureus". Clin Microbiol Infect 12 Suppl 1: 3-8. PubMed. [1]
14. ^ Lucy A, Guo H, Li W, Ding S (2000). "Suppression of post-transcriptional gene silencing by a plant viral protein localized in the nucleus". EMBO J 19 (7): 1672–80. PMID 10747034.
15. ^ Rice SH. (2004). Evolutionary Theory: Mathematical and Conceptual Foundations. Sinauer Associates: Sunderland, Massachusetts, USA. ISBN 0-87893-702-1 See esp. ch. 5 and 6 for a quantitative treatment.
16. ^ Hamilton WD. (1964). The genetical evolution of social behaviour I and II. Journal of Theoretical Biology 7: 1-16 and 17-52. PMID 5875341 PMID 5875340
17. ^ Trivers RL. (1971). The evolution of reciprocal altruism. Q Rev Biol 46: 35-57.
18. ^ He L, Hannon GJ. (2004). MicroRNAs: small RNAs with a big role in gene regulation. Nat Rev Genet 5(7):522-31. PMID 15211354
19. ^ Kryukov GV, Schmidt S & Sunyaev S (2005) Small fitness effect of mutations in highly conserved non-coding regions. Human Molecular Genetics 14:2221-9
20. ^ Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS & Haussler D (2004) Ultraconserved elements in the human genome. Science 304:1321-5
21. ^ Eyre-Walker A, Woolfit M, Phelps T. (2006). The distribution of fitness effects of new deleterious amino acid mutations in humans. Genetics 173(2):891-900. PMID 16547091
22. ^ Galis F (1999) Why do almost all mammals have seven cervical vertebrae? developmental constraints, Hox genes, and cancer. J Exp Zool 285:19-26
23. ^ Zakany J, FromentalRamain C, Warot X & Duboule D (1997) Regulation of number and size of digits by posterior Hox genes: a dose-dependent mechanism with potential evolutionary implications. Proc Natl Acad Sci USA 94:13695-700
24. ^ Sanyal S, Jansen HG, de Grip WJ, Nevo E, de Jong WW. (1990). The eye of the blind mole rat, Spalax ehrenbergi. Rudiment with hidden function? Invest Ophthalmol Vis Sci. 1990 31(7):1398-404. PMID 2142147
25. ^ Salzburger W, Baric S, Sturmbauer C. (2002). Speciation via introgressive hybridization in East African cichlids? Mol Ecol 11(3): 619–625. PMID 11918795
26. ^ Empedocles, On Nature, vol. Book II
27. ^ Lucretius, De rerum natura, vol. Book V
28. ^ Aristotle, Physics, vol. Book II, Chapters 4 and 8
29. ^ Conway Zirkle (1941). Natural Selection before the "Origin of Species", Proceedings of the American Philosophical Society 84 (1), p. 71-123.
30. ^ Mehmet Bayrakdar (Third Quarter, 1983). "Al-Jahiz And the Rise of Biological Evolutionism", The Islamic Quarterly. London.
31. ^ Maupertuis, Pierre Louis (1748). " ()". Histoire de l'academie des sciences et belle lettres de Berlin 1746: 267-294.
32. ^ Chevalier de Lamarck J-B, de Monet PA (1809) Philosophie Zoologique
33. ^ Joravsky D. (1959). Soviet Marxism and Biology before Lysenko. Journal of the History of Ideas 20(1):85-104.
34. ^ Origin of Species, Chapter 3, page 61
35. ^ Origin of Species, Chapter 3, page 62
36. ^ Orrell, David (2007) Apollo's Arrow Toronto: HarperCollins Publishers Ltd. [2]
37. ^ Wallace, Alfred Russel (1870) Contributions to the Theory of Natural Selection New York: Macmillan & Co. [3]
38. ^ Origin of Species, Introduction, page 6
39. ^ Eisley L. (1958). Darwin's Century: Evolution and the Men Who Discovered It. Doubleday & Co: New York, USA.
40. ^ Kuhn TS. [1962] (1996). The Structure of Scientific Revolution 3rd ed. University of Chicago Press: Chicago, Illinois, USA. ISBN 0-226-45808-3
41. ^ Mills SK, Beatty JH. [1979] (1994). The Propensity Interpretation of Fitness. Originally in Philosophy of Science (1979) 46: 263-286; republished in Conceptual Issues in Evolutionary Biology 2nd ed. Elliot Sober, ed. MIT Press: Cambridge, Massachusetts, USA. pp3-23. ISBN 0-262-69162-0.
42. ^ Darwin Correspondence Online Database: Darwin, C. R. to Lyell, Charles, 28 September 1860. Retrieved on 2006-05-10.
43. ^ Haldane JBS (1932) The Causes of Evolution; Haldane JBS (1957) The cost of natural selection. J Genet 55:511-24([4].
44. ^ Wright S (1932) The roles of mutation, inbreeding, crossbreeding and selection in evolution Proc 6th Int Cong Genet 1:356–66
45. ^ Dobzhansky Th (1937) Genetics and the Origin of Species Columbia University Press, New York. (2nd ed., 1941; 3rd edn., 1951)
46. ^ Mayr E (1942) Systematics and the Origin of Species Columbia University Press, New York. ISBN 0-674-86250-3
47. ^ The New York Review of Books: Darwinian Fundamentalism (accessed May 6, 2006)
48. ^ Engels F (1873-86) Dialectics of Nature 3d ed. Moscow: Progress, 1964 [5]
49. ^ Quoted in translation in Eisenberg L (2005) Which image for Lorenz? Am J Psychiatry 162:1760 [6]
50. ^ e.g. Wilson, DS (2002) Darwin's Cathedral: Evolution, Religion, and the Nature of Society. University of Chicago Press, ISBN 0-226-90134-3
51. ^ Pinker S. [1994] (1995). The Language Instinct: How the Mind Creates Language. HarperCollins: New York, NY, USA. ISBN 0-06-097651-9
52. ^ Dawkins R. [1976] (1989). The Selfish Gene. Oxford University Press: New York, NY, USA, p.192. ISBN 0-19-286092-5
53. ^ Dennett DC. (1991). Consciousness Explained. Little, Brown, and Co: New York, NY, USA. ISBN 0-316-18066-1
54. ^ For example, see Rose H, Rose SPR, Jencks C. (2000). Alas, Poor Darwin: Arguments Against Evolutionary Psychology. Harmony Books. ISBN 0609605135
55. ^ Lotka AJ (1922a) Contribution to the energetics of evolution [PDF] Proc Natl Acad Sci USA 8:147–51
Lotka AJ (1922b) Natural selection as a physical principle [PDF] Proc Natl Acad Sci USA 8:151–4
56. ^ Kauffman SA (1993) The Origin of order. Self-organization and selection in evolution. New York: Oxford University Press ISBN 0-19-507951-5
57. ^ Goldberg DE. (1989). Genetic Algorithms in Search, Optimization and Machine Learning. Addison-Wesley: Boston, MA, USA
58. ^ Mitchell, Melanie, (1996), An Introduction to Genetic Algorithms, MIT Press, Cambridge, MA.
59. ^ Wolfram, Stephen, A New Kind of Science p383 - 432
Further reading
- For technical audiences
- Gould, Stephen Jay (2002). The Structure of Evolutionary Theory. Harvard University Press. ISBN 0-674-00613-5.
- Maynard Smith, John (1993) The Theory of Evolution. Cambridge University Press.
- Popper, Karl (1978) Natural selection and the emergence of mind. Dialectica 32:339-55. See [7]
- Sober, Elliott (1984) The Nature of Selection: Evolutionary Theory in Philosophical Focus. University of Chicago Press.
- Williams, George C. (1966) Adaptation and Natural Selection: A Critique of Some Current Evolutionary Thought. Oxford University Press.
- Williams George C. (1992) Natural Selection: Domains, Levels and Challenges. Oxford University Press.
- For general audiences
- Dawkins, Richard (1996) Climbing Mount Improbable. Penguin Books, ISBN 0-670-85018-7.
- Dennett, Daniel (1995) Darwin's Dangerous Idea: Evolution and the Meanings of Life. Simon & Schuster ISBN 0-684-82471-X.
- Gould, Stephen Jay (1997) Ever Since Darwin: Reflections in Natural History. Norton, ISBN 0-393-06425-5.
- Jones, Steve (2001) Darwin's Ghost: The Origin of Species Updated. Ballantine Books ISBN 0-345-42277-5. Also published in Britain under the title Almost like a whale: the origin of species updated. Doubleday. ISBN 1-86230-025-9.
- Lewontin, Richard (1978) Adaptation. Scientific American 239:212-30
- Weiner, Jonathan (1994) The Beak of the Finch: A Story of Evolution in Our Time. Vintage Books, ISBN 0-679-73337-X.
- Historical
- Kohm M (2004) A Reason for Everything: Natural Selection and the English Imagination. London: Faber and Faber. ISBN 0-571-22392-3. For review, see [8] van Wyhe J (2005) Human Nature Review 5:1-4
External links
- The Origin of Species by Charles Darwin - Chapter 4,Natural Selection
- Natural Selection- Modeling for Understanding in Science Education, University of Wisconsin
- Natural Selection from University of Berkeley education website
Basic topics in |
|---|
Evidence of evolution
Processes of evolution: adaptation - macroevolution - microevolution - speciation
Population genetic mechanisms: natural selection - genetic drift - gene flow - mutation
Evolutionary developmental biology (Evo-devo) concepts: phenotypic plasticity - canalisation - modularity
Modes of evolution: anagenesis - catagenesis - cladogenesis
History: History of evolutionary thought - Charles Darwin - The Origin of Species - modern evolutionary synthesis - Evolutionary history of life
Other subfields: ecological genetics - human evolution - molecular evolution - phylogenetics - systematics
List of evolutionary biology topics - Timeline of evolution
|
Topics in population genetics | |
|---|---|
| Key concepts | Hardy-Weinberg law • genetic linkage • linkage disequilibrium • Fisher's fundamental theorem • neutral theory |
| Selection | natural • sexual • artificial • ecological |
| Effects of selection on genomic variation | genetic hitchhiking • background selection |
| Genetic drift | small population size • population bottleneck • founder effect • coalescence |
| Founders | R.A. Fisher • J. B. S. Haldane • Sewall Wright |
| Related topics | evolution • microevolution • evolutionary game theory • fitness landscape • genetic genealogy |
| List of evolutionary biology topics | |
Biology (from Greek: βίος, bio, "life"; and λόγος, logos, "knowledge"), also referred to as the biological sciences, is the scientific study of life.
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An adaptation is a positive characteristic of an organism that has been favored by natural selection.[1] The concept is central to biology, particularly in evolutionary biology.
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In population genetics, genetic drift (or more precisely allelic drift) is the statistical effect that results from the influence that chance has on the survival of alleles (variants of a gene).
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In population genetics, gene flow (also known as gene migration) is the transfer of alleles of genes from one population to another.
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mutations are changes to the base pair sequence of the genetic material of an organism. Mutations can be caused by copying errors in the genetic material during cell division, by exposure to ultraviolet or ionizing radiation, chemical mutagens, or viruses, or can occur deliberately
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Speciation is the evolutionary process by which new biological species arise. There are four modes of natural speciation, based on the extent to which speciating populations are geographically isolated from one another:
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evidence of the theory of evolution provides a wealth of information on the natural processes by which the variety of life on Earth developed.
Fossils are important for estimating when various lineages developed.
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Fossils are important for estimating when various lineages developed.
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Evolutionary thought has roots in antiquity as philosophical ideas known to the Greeks, Romans, Indians, Chinese and Muslims. Until the 18th century, however, Western biological thought was dominated by essentialism, the idea that living forms are static and unchanging in time.
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The modern evolutionary synthesis refers to a set of ideas from several biological specialities that were brought together to form a unified theory of evolution accepted by the great majority of working biologists.
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The social effects of evolutionary thought have been considerable. As the scientific explanation of life's diversity has developed, it has often displaced alternative, sometimes very widely held, explanations.
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There have been numerous objections to evolution since alternative evolutionary ideas came to be hotly debated around the start of the nineteenth century.
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Evolutionary biology is a sub-field of biology concerned with the origin and descent of species, as well as their change, multiplication, and diversity over time.
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For the book see Ecological Genetics (book)
Ecological genetics is the study of genetics in the context of the interactions among organisms and between the organisms and their environment...... Click the link for more information.
Evolutionary developmental biology (evolution of development or informally, evo-devo) is a field of biology that compares the developmental processes of different animals and plants in an attempt to determine the ancestral relationship between organisms and how
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Human evolution is the part of biological evolution concerning the emergence of humans as a distinct species from other apes. It is the subject of a broad scientific inquiry that seeks to understand and describe how this change and development occurred.
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Molecular evolution is the process of evolution at the scale of DNA, RNA, and proteins. Molecular evolution emerged as a scientific field in the 1960s as researchers from molecular biology, evolutionary biology and population genetics sought to understand recent discoveries on the
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The evolutionary history of life and the origin of life are fields of ongoing geological and biological research. Although it is not necessary to understand the origin of life on earth to accept evolution by natural
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phylogenetics (Greek: phyle = tribe, race and genetikos = relative to birth, from genesis = birth) is the study of evolutionary relatedness among various groups of organisms (e.g., species, populations).
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Population genetics is the study of the allele frequency distribution and change under the influence of the four evolutionary forces: natural selection, genetic drift, mutation and gene flow. It also takes account of population subdivision and population structure in space.
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character is an attribute of an organism that allows it to be compared with another. In genetics this refers to heritable features which can exist in more than one state.[1] A trait
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In genetics, heritability is the proportion of phenotypic variation in a population that is attributable to genetic variation among individuals. Variation among individuals may be due to genetic and/or environmental factors.
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Generation (from the Greek γενεά), also known as procreation, is the act of producing offspring. It can also refer to the act of creating something inanimate such as electrical generation or cryptographic code generation.
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Plantae Chromalveolata Heterokontophyta Haptophyta Cryptophyta Alveolata
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phenotype describes the total physical appearance of an organism, as opposed to its genotype. This genotype-phenotype distinction was proposed by Wilhelm Johannsen in 1911 to make clear the difference between an organism's heredity and what that heredity produces.
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Genetic may refer to:
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- Genetics, in biology, the science of genes, heredity, and the variation of organisms
- Genetic (linguistics), in linguistics, a relationship between two languages with a common ancestor language
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Genotype describes the genetic constitution of an individual, that is the specific allelic makeup of an individual, usually with reference to a specific character under consideration [1].
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Allele frequency is a measure of the relative frequency of an allele on a genetic locus in a population. Usually it is expressed as a proportion or a percentage. In population genetics, allele frequencies show the genetic diversity of a species population or equivalently the
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An adaptation is a positive characteristic of an organism that has been favored by natural selection.[1] The concept is central to biology, particularly in evolutionary biology.
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