Information about Bioinorganic Chemistry
Bioinorganic chemistry is a specialized field that spans the chemistry of metal-containing molecules within biological systems. This field is concerned with the control and use of metal ions in biochemical processes. Although bioinorganic chemistry includes the study of artificially introduced metals (e.g. medicinally), many natural occurring biological processes (such as respiration) depend upon molecules containing inorganic elements, such as metalloproteins, and these natural processes are also studied by bioinorganic chemistry. Bioinorganic chemistry has developed from the continuing research in inorganic chemistry and its important associations in biological chemistry.
As a mix of biochemistry and inorganic chemistry, bioinorganic chemistry is important in realizing the implications of electron-transfer proteins, substrate bindings and activation, atom and group transfer chemistry as well as metal properties in biological chemistry.
Metal ion transport and storage covers a diverse collection of ion channels, ion pumps (e.g. NaKATPase), vacuoles, siderophores, and other proteins and small molecules whose aim is to carefully control the concentration of metal ions in the cell.
Hydrolase enzymes include a diverse collection of proteins that interact with water and substrates. Examples of this class of metalloproteins are carbonic anhydrase, metallophosphatases, and metalloproteinases.
Metal-containing electron transfer proteins are comprised of three major classes:
Oxygen transport and activation proteins make extensive use of metals such as iron, copper, and manganese. Heme is utilized by red blood cells in the form of hemoglobin for oxygen transport and is perhaps the most recognized metal system in biology. Other oxygen transport systems include myoglobin, hemocyanin, and hemerythrin. Oxidases and oxygenases are metal systems found throughout nature that take advantage of oxygen to carry out important reactions such as energy generation in cytochrome c oxidase or small molecule oxidation in cytochrome P450 oxidases or methane monooxygenase. Some metalloproteins are designed to protect a biological system from the potentially harmful effects of oxygen and other reactive oxygen-containing molecules such as hydrogen peroxide. These systems include peroxidases, catalases, and superoxide dismutases. A complementary metalloprotein to those that react with oxygen is the oxygen evolving complex present in plants. This system is part of the complex protein machinery that produces oxygen as plants perform photosynthesis.
Bioorganometallic systems such as hydrogenases and methylcobalamin are biological examples of organometallic chemistry.
The nitrogen metabolism pathways make extensive use of metals. Nitrogenase is one of the more famous metalloproteins associated with nitrogen metabolism. More recently, the cardiovascular and nueronal importance of nitric oxide has been examined, including the enzyme nitric oxide synthase. (See also: nitrogen assimilation.)
Metals in medicine is the study of the design and mechanism of action of metal-containing pharmaceuticals, and compounds that interact with endogenous metal ions in enzyme active sites. This diverse field includes the platinum and ruthenium anti-cancer drugs, chelating agents, gold drug chaperones, and gadolinium contrast agents.
As a mix of biochemistry and inorganic chemistry, bioinorganic chemistry is important in realizing the implications of electron-transfer proteins, substrate bindings and activation, atom and group transfer chemistry as well as metal properties in biological chemistry.
History
Paul Ehrlich used organoarsenic (“arsenicals”) for the treatment of syphilis, demonstrating the relevance of metals, or at least metalloids, to medicine, that blossomed with Rosenberg’s discovery of the anti-cancer activity of “cisplatin (cis-PtCl2(NH3)2). The first protein ever crystallized (see James B. Sumner) was urease, later shown to contain nickel at its active site. Vitamin B12, the cure for pernicious anemia was shown crystallographically by Dorothy Crowfoot Hodgkin to consist of a cobalt in a corrin macrocycle. The Watson-Crick structure for DNA demonstrated the key structural role played by phosphate-containing polymers.Research areas
There are several distinct systems of interest in bioinorganic chemistry. These areas include metal ion transport and storage, metallohydrolase enzymes, metal-containing electron transfer proteins, oxygen transport and activation proteins, bioorganometallic systems such as hydrogenases and alkyltransferases, and enzymes involved in nitrogen metabolism pathways.Metal ion transport and storage covers a diverse collection of ion channels, ion pumps (e.g. NaKATPase), vacuoles, siderophores, and other proteins and small molecules whose aim is to carefully control the concentration of metal ions in the cell.
Hydrolase enzymes include a diverse collection of proteins that interact with water and substrates. Examples of this class of metalloproteins are carbonic anhydrase, metallophosphatases, and metalloproteinases.
Metal-containing electron transfer proteins are comprised of three major classes:
- iron-sulfur proteins such as rubredoxins, ferredoxins, Rieske proteins, and aconitases
- blue copper proteins
- cytochromes
Oxygen transport and activation proteins make extensive use of metals such as iron, copper, and manganese. Heme is utilized by red blood cells in the form of hemoglobin for oxygen transport and is perhaps the most recognized metal system in biology. Other oxygen transport systems include myoglobin, hemocyanin, and hemerythrin. Oxidases and oxygenases are metal systems found throughout nature that take advantage of oxygen to carry out important reactions such as energy generation in cytochrome c oxidase or small molecule oxidation in cytochrome P450 oxidases or methane monooxygenase. Some metalloproteins are designed to protect a biological system from the potentially harmful effects of oxygen and other reactive oxygen-containing molecules such as hydrogen peroxide. These systems include peroxidases, catalases, and superoxide dismutases. A complementary metalloprotein to those that react with oxygen is the oxygen evolving complex present in plants. This system is part of the complex protein machinery that produces oxygen as plants perform photosynthesis.
Bioorganometallic systems such as hydrogenases and methylcobalamin are biological examples of organometallic chemistry.
The nitrogen metabolism pathways make extensive use of metals. Nitrogenase is one of the more famous metalloproteins associated with nitrogen metabolism. More recently, the cardiovascular and nueronal importance of nitric oxide has been examined, including the enzyme nitric oxide synthase. (See also: nitrogen assimilation.)
Metals in medicine is the study of the design and mechanism of action of metal-containing pharmaceuticals, and compounds that interact with endogenous metal ions in enzyme active sites. This diverse field includes the platinum and ruthenium anti-cancer drugs, chelating agents, gold drug chaperones, and gadolinium contrast agents.
External links
- The Society of Biological Inorganic Chemistry (SBIC)'s home page
- Glossary of Terms in Bioinorganic Chemistry
- Metal Coordination Groups in Proteins by Marjorie Harding
- Bio, M. et al. home page
References
- Ivano Bertini, Harry B. Gray, Edward I. Stiefel, Joan Selverstone Valentine, Biological Inorganic Chemistry, University Science Books, 2007, ISBN 1-891389-43-2
- Wolfgang Kaim, Brigitte Schwederski "Bioinorganic Chemistry: Inorganic Elements in the Chemistry of Life." John Wiley and Sons, 1994, ISBN 0-471-94369-X
- Ivano Bertini, Harry B. Gray, Stephen J. Lippard, Joan Selverstone Valentine, "Bioinorganic Chemistry," University Science Books, 1994, ISBN 0-935702-57-1
- Stephen J. Lippard, Jeremy M. Berg, Principles of Bioinorganic Chemistry, University Science Books, 1994, ISBN 0-935702-72-5
- Rosette M. Roat-Malone, Bioinorganic Chemistry : A Short Course, Wiley-Interscience, 2002, ISBN 0-471-15976-X
- J.J.R. Fraústo da Silva and R.J.P. Williams, The biological chemistry of the elements: The inorganic chemistry of life, 2nd Edition, Oxford University Press, 2001, ISBN 0-19-850848-4
- Lawrence Que, Jr., ed., Physical Methods in Bioinorganic Chemistry, University Science Books, 2000, ISBN 1-891389-02-5
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The Macro Expansion Template Attribute Language complements TAL, providing macros which allow the reuse of code across template files. Both were created for Zope but are used in other Python projects as well.
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molecule is defined as a sufficiently stable electrically neutral group of at least two atoms in a definite arrangement held together by strong chemical bonds.[1][2] In organic chemistry and biochemistry, the term molecule
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ion is an atom or molecule which has lost or gained one or more electrons, making it positively or negatively charged. A negatively charged ion, which has more electrons in its electron shells than it has protons in its nuclei, is known as an anion
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biological process is a process of a living organism. Biological processes are made up of any number of chemical reactions or other events that results in a transformation.
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Cellular respiration describes the metabolic reactions and processes that take place in a cell or across the cell membrane to obtain biochemical energy from fuel molecules and the release of the cells' waste products.
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In biochemistry, a metalloprotein is a generic term for a protein that contains a metal cofactor. The metal may be an isolated ion or may be coordinated with a nonprotein organic compound, such as the porphyrin found in hemoproteins.
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Biochemistry is the study of the chemical processes in living organisms.[1] The word "biochemistry" comes from the Greek word βιοχημεία biochēmeia, which means "the chemistry of life.
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Inorganic chemistry is the branch of chemistry concerned with the properties and behavior of inorganic compounds. This field covers all chemical compounds except the myriad organic compounds (compounds containing C-H bonds), which are the subjects of organic chemistry.
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Proteins are large organic compounds made of amino acids arranged in a linear chain and joined together by peptide bonds between the carboxyl and amino groups of adjacent amino acid residues.
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Paul Ehrlich (March 14, 1854 – August 20, 1915) was a German scientist who won the 1908 Nobel Prize in Physiology or Medicine. He is noted for his work in hematology, immunology, and chemotherapy. Ehrlich predicted autoimmunity calling it "horror autotoxicus".
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An organoarsenic compound in organic chemistry is an organic compound containing a chemical bond between arsenic and carbon. Many organoarsenic compounds are produced industrially with uses as insecticide, herbicide and fungicide. The parent compound is arsine.
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Syphilis
Classification & external resources
Image of spiral-shaped organisms responsible for causing syphilis
ICD-10 A 50. -A 53.
ICD-9 090 - 097
MedlinePlus 001327
eMedicine med/2224 emerg/563 derm/413
Syphilis
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Classification & external resources
Image of spiral-shaped organisms responsible for causing syphilis
ICD-10 A 50. -A 53.
ICD-9 090 - 097
MedlinePlus 001327
eMedicine med/2224 emerg/563 derm/413
Syphilis
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Cisplatin, cisplatinum or cis-diamminedichloroplatinum(II) (CDDP) is a platinum-based chemotherapy drug used to treat various types of cancers, including sarcomas, some carcinomas (e.g. small cell lung cancer, and ovarian cancer), lymphomas and germ cell tumors.
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James B. Sumner
Born November 19 1887
Canton, Massachusetts, United States
Died July 12 1955 (aged 69)
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Born November 19 1887
Canton, Massachusetts, United States
Died July 12 1955 (aged 69)
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Urease (EC 3.5.1.5 ) is an enzyme that catalyzes the hydrolysis of urea into carbon dioxide and ammonia. The reaction occurs as follows:
(NH2)2CO + H2O → CO2 + 2NH3
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(NH2)2CO + H2O → CO2 + 2NH3
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The active site of an enzyme contains the catalytic and binding sites. The structure and chemical properties of the active site allow the recognition and binding of the substrate.
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Cyanocobalamin is a compound that is metabolized to a vitamin in the B complex commonly known as vitamin B 12 (or B 12 for short).
Vitamin B 12
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Vitamin B 12
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MeSH D000752
Pernicious anemia (also known as Biermer's anaemia or Addison's anaemia or Addison-Biermer anaemia) is a form of megaloblastic anaemia due to vitamin B12 deficiency dependent on impaired absorption of vitamin B
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Pernicious anemia (also known as Biermer's anaemia or Addison's anaemia or Addison-Biermer anaemia) is a form of megaloblastic anaemia due to vitamin B12 deficiency dependent on impaired absorption of vitamin B
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Dorothy Mary Crowfoot Hodgkin
Dorothy Hodgkin with a ball-stick representation of insulin, courtesy of Pugwash Conferences on Science & World Affairs.
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Dorothy Hodgkin with a ball-stick representation of insulin, courtesy of Pugwash Conferences on Science & World Affairs.
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In biochemistry, a hydrolase is an enzyme that catalyzes the hydrolysis of a chemical bond. For example, an enzyme that catalyzed the following reaction is a hydrolase:
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- A–B + H2O → A–OH + B–H
Nomenclature
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Electron transfer (ET) is the process by which an electron moves from one atom or molecule to another atom or molecule. ET is a mechanistic description of the thermodynamic concept of redox, wherein the formal oxidation states of both reaction partners change.
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Metabolism is the complete set of chemical reactions that occur in living cells. These processes are the basis of life, allowing cells to grow and reproduce, maintain their structures, and respond to their environments. Metabolism is usually divided into two categories.
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Ion channels are pore-forming proteins that help to establish and control the small voltage gradient across the plasma membrane of all living cells (see cell potential) by allowing the flow of ions down their electrochemical gradient.
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vacuole (11) cytoplasm (12) lysosome (13) centrioles]] Vacuoles are found in the cytoplasm of most plant cells. Vacuoles are membrane-bound compartments within some eukaryotic cells that can serve a variety of secretory, excretory, and storage functions.
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A Siderophore (Greek for iron carrier) is an iron chelating compound secreted by microorganisms. Iron Fe3+ ions have a very low solubility at neutral pH and therefore cannot be utilized by organisms.
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Proteins are large organic compounds made of amino acids arranged in a linear chain and joined together by peptide bonds between the carboxyl and amino groups of adjacent amino acid residues.
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In biochemistry, a hydrolase is an enzyme that catalyzes the hydrolysis of a chemical bond. For example, an enzyme that catalyzed the following reaction is a hydrolase:
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- A–B + H2O → A–OH + B–H
Nomenclature
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In biochemistry, a metalloprotein is a generic term for a protein that contains a metal cofactor. The metal may be an isolated ion or may be coordinated with a nonprotein organic compound, such as the porphyrin found in hemoproteins.
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